Journal: bioRxiv
Article Title: The Epigenetic Factor PHF13 Governs Trophoblast Stemness and Differentiation
doi: 10.64898/2026.03.14.711150
Figure Lengend Snippet: A. Gene set enrichment analysis of canonical trophoblastic progenitor genes (shown as STEMNESS, normalized enrichment score: 1.44; FDR-adjusted value: 0.07) and syncytiotrophoblast-dominant genes (shown as STB, normalized enrichment score: 2.11; FDR-adjusted value: 1 x 10 -5 ) in TS cells deficient for PHF13 . Key gene names and results are detailed in the text. B. A volcano plot showing the 621 differentially expressed mRNAs shared in both PHF13 kd lines, when compared to controls. The x-axis represents the log 2 fold change in expression (kd/ctrl), whereas the y-axis shows the minus log 10 of the FDR-adjusted p value. The horizontal dash line marks the signficance threshold (FDR-adjusted p <0.05; –log 10 > 1.30). Red points highlight downregulated genes, including PHF13, WNT6, and SOX15 , and upregulated genes that are largely expressed in differentiated trophoblasts, including ERVFRD-1, CYP19A1, LGALS16, GCM1, and CGB8. C. A volcano plot showing the 146 differentially expressed genes shared between PHF13 kd TS cells and ko BeWo cells. The x-axis represents log 2 fold change in expression (kokd/ctrl), whereas the y-axis shows the minus log 10 of the FDR-adjusted p value. The horizontal dash line marks the signficance threshold (FDR-adjusted p <0.05; –log 10 > 1.30). Red points indicate significantly altered genes, which include downregulated stemness-associated genes ( WNT6 and SOX15 ), and upregulated differentiated trophoblast markers (e.g. ERVFRD-1, CYP19A1, LGALS16, GCM1, CGA, CGB5, CGB3, CGB8, and PGF ).
Article Snippet: Human choriocarcinoma BeWo cell lines (ATCC, #CCL-98) were cultured in F-12K Kaighn’s modified medium (ATCC, #30-2004), supplemented with 10% FBS (ATCC, #30-2020) and 1% penicillin–streptomycin and were fed with the new F-12K complete medium every 3 days and passaged using TrypLE express enzyme, phenol red (Thermo Fisher, #12605010).
Techniques: Expressing